Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

Basic Information

Latin Name: Macaca fascicularis
Common Name: Crab-eating macaque
Kingdom: Animalia
Division: Primates
Taxonomy ID: 9541
Parent Taxonomy ID: 9539

Datasets

Download Dataset ID BioProject ID Project ID Dataset Name Species Strategy Sample Number Tissue Cell Type Cell Line Healthy Condition Development Stage Case Detail Control Detail Cell Number Biological Condition Quality and Quantity
Baseline Genetic Phenotypic Environmental Spatial Temporal RNA Type Median Mapping Quality Median Coverage Max Sequencing Length Max Replicate#

Publications

Exploiting orthology and de novo transcriptome assembly to refine target sequence information.
Söllner JF, Leparc G, Zwick M, Schönberger T, Hildebrandt T, Nieselt K, Simon E.
BMC Med Genomics. 2019-05-23; 12 (1)
The embryonic ontogeny of the gonadal somatic cells in mice and monkeys.
Sasaki K, Oguchi A, Cheng K, Murakawa Y, Okamoto I, Ohta H, Yabuta Y, Iwatani C, Tsuchiya H, Yamamoto T, Seita Y, Saitou M.
Cell Rep. 2021-05-01; 35 (5)
Extensive Sub-RPE Complement Deposition in a Nonhuman Primate Model of Early-Stage Diabetic Retinopathy.
Fan S, Yang Z, Liu Y, Zhong J, Zhang S, Xiao Y, Liu X, Yi W, He C, Hu Y, Liu X.
Invest Ophthalmol Vis Sci. 2021-03-01; 62 (3)
Single-Cell Transcriptome Profiling Reveals the Suppressive Role of Retinal Neurons in Microglia Activation Under Diabetes Mellitus.
Xiao Y, Hu X, Fan S, Zhong J, Mo X, Liu X, Hu Y.
Front Cell Dev Biol. 2021-08-09; 9
Infection with the Makona variant results in a delayed and distinct host immune response compared to previous Ebola virus variants.
Versteeg K, Menicucci AR, Woolsey C, Mire CE, Geisbert JB, Cross RW, Agans KN, Jeske D, Messaoudi I, Geisbert TW.
Sci Rep. 2017-08-29; 7 (1)
Contrasting effects of Western vs Mediterranean diets on monocyte inflammatory gene expression and social behavior in a primate model.
Johnson CSC, Shively CA, Michalson KT, Lea AJ, DeBo RJ, Howard TD, Hawkins GA, Appt SE, Liu Y, McCall CE, Herrington DM, Ip EH, Register TC, Snyder-Mackler N.
Elife. 2021-08-02; 10
Autism-like behaviours and germline transmission in transgenic monkeys overexpressing MeCP2.
Liu Z, Li X, Zhang JT, Cai YJ, Cheng TL, Cheng C, Wang Y, Zhang CC, Nie YH, Chen ZF, Bian WJ, Zhang L, Xiao J, Lu B, Zhang YF, Zhang XD, Sang X, Wu JJ, Xu X, Xiong ZQ, Zhang F, Yu X, Gong N, Zhou WH, Sun Q, Qiu Z.
Nature. 2016-01-25; 530 (7588)
Single-cell RNA sequencing reveals regulation of fetal ovary development in the monkey (Macaca fascicularis).
Zhao ZH, Li CY, Meng TG, Wang Y, Liu WB, Li A, Cai YJ, Hou Y, Schatten H, Wang ZB, Sun QY, Sun Q.
Cell Discov. 2020-12-29; 6 (1)
A conserved transcriptional response to intranasal Ebola virus exposure in nonhuman primates prior to onset of fever.
Speranza E, Bixler SL, Altamura LA, Arnold CE, Pratt WD, Taylor-Howell C, Burrows C, Aguilar W, Rossi F, Shamblin JD, Wollen SE, Zelko JM, Minogue T, Nagle E, Palacios G, Goff AJ, Connor JH.
Sci Transl Med. 2018-03-01; 10 (434)
Transcriptome analysis reveals rod/cone photoreceptor specific signatures across mammalian retinas.
Mustafi D, Kevany BM, Bai X, Golczak M, Adams MD, Wynshaw-Boris A, Palczewski K.
Hum Mol Genet. 2016-10-01; 25 (20)